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Software  | GenDB - Open Source Genome Annotation Framework
It is a genome annotation system for prokaryotic genomes. The GenDB annotation engine will automatically identify, classify and annotate genes using a large collection of software tools.
»Read more... »login »paper |  | EMMA - Platform for Consistent Storage and Efficient Analysis of Microarray Data
a MAGE compliant software platform for the evaluation of data derived by genome-wide transcriptomic studies. It provides functionality for normalization, testing for differentially expressed genes and clustering the measured data.
»Read more... »login »paper |  | ArrayLIMS - Laboratory Information Management System
Provides a permanent and consistent storage of the microarray experiment data as well as a fast information retrieval, making the data rapidly available.
»Read more... »login |  | BACCardI - Automatic validation of shotgun assemblies via clone maps.
The graphical tool BACCardI is used for the construction of virtual clone maps from standard assembler output files or BLAST based sequence comparisons.
»Read more...»paper |  | SAMS - Sequence Analysis and Management System.
Open source system that automatically and manually analyze sequence data such as ESTs or SBS sequencing reads via a web interface.
»Read more...»login»paper |  | CAmpER - Real-time PCR analysis software
Automatic analysis, annotation and storage of real-time PCR experiments performed with different real-time PCR systems, currently the Lightcycler® and the Opticon®.
»Read more... » login |  | EDGAR - Efficient Database framework for comparative Genome Analysis using BLAST score Ratios
EDGAR is able to create syntheny plots, score ratio value plots, or Venn diagrams. It is also a tool for calculation of core genome, pan genome, and singleton genes.
» login »paper |  | QuPE - an integrated bioinformatics platform for the storage and analysis of quantitative proteomics data
The rich internet application QuPE provides comprehensive data management and analysis functions for mass spectrometry-based proteomics experiments including the calculation of protein abundance ratios from isotope-labeled data and the statistical evaluation of quantification results.
»Read more... » login » Algorithms and Resources » paper |  | IGetDB - Online analytical platform for systems biology data
It consists of a data warehouse and various analysis pipelines for systems biology data. It integrates data from all popular software platforms of the BRF.
»Read more... » login |  | MeltDB - A Framework for the Analysis and Integration of Metabolome Experiment Datasets
The MeltDB open source framework is designed to provide analysis methods for raw GC- and LC-MS datasets and offers methods to combine the respective results.
»Read more... » login »paper |  | ProMeTra - Visualizing Functional Genomics Data on High Quality Pathway Maps.
The ProMeTra open source framework is designed to provide visualization methods for multi-omics datasets. The integration of genomic and transcriptomic datasets originating from MeltDB, ProSE or EMMA is achieved via SOAP based web services.
»Read more... » login |  | GPMS - General Project Management System
A central component for managing projects and theis users, providing a systematic approach that helps the administrators to keep an overview across all projects.
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Tools CARMA- Characterizing Short Read Metagenomes
CARMA is a software pipeline for characterizing the taxonomic composition and genetic diversity of short-read metagenomes. The software was originally designed for the analysis of environmental metagenomes obtained by the ultra-fast 454 pyrosequencing system.
»Read more... | Trace2PS and FSA2PS
Two software toolkits for converting trace and fsa files to PostScript format.
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Last Updated ( Tuesday, 18 October 2011 )
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