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| rococo (Reconstruction of Conserved Optimal Clusters of Orthologs) I have developed this program as part of my Ph.D. project. Rococo reconstructs ancestral gene clusters. Given the topology of a phylogenetic tree and the gene orders of the leaf nodes, it calculates sets of gene clusters for the inner nodes. In contrast to roci (see below), this method provides a well defined optimization criterion and is not restricted to a specific gene cluster model. |
| roci (Reconstruction of Conserved Intervals) I have developed this program during my diploma theses. Roci reconstructs ancestral gene orders of a phylogenetic tree. Given the topology of a phylogenetic tree and the gene orders of the leaf nodes, it calculates sets of gene orders for the inner nodes, represented by conserved intervals. |
| Curriculum Vitae |
| private homepage |
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