CeBiTec - Homepage of Nils Hoffmann

Personal Homepage of Nils Hoffmann

Nils Hoffmann

Postal Address:	Universität Bielefeld AG Genominformatik 33594 Bielefeld Germany
Office:	U10-144
Office Phone:	+49-(0)521-106-4342
E-mail:	nils.hoffmanncebitec.uni-bielefeld.de

Research Interests

Algorithms for analytical high-throughput applications, e.g. GC, GCxGC, and LC-MS
Chem(o)informatics, QSPR
Scientific visualization
Software engineering

Publications

Posters

2013

BiPACE - a generic retention time alignment algorithm for gas-chromatography mass-spectrometry data (pdf)
Nils Hoffmann, Mathias Wilhelm, Anja Doebbe, Karsten Niehaus, Jens Stoye
Presented at Metabolomics 2013

2012

Maltcms and Maui - an OpenSource Software Framework and User Interface for High-Throughput Metabolomics (pdf)
Nils Hoffmann, Mathias Wilhelm, Kai Stadermann, Jens Stoye
Presented at ASMS 2012
Proteus, An interactive Laboratory Journal Application for Gel-based Proteomics (pdf)
Konstantin Otte, Nils Hoffmann, Fabian Schulte, Karsten Niehaus, Jens Stoye
Presented at FGP 2012

2011

Maui and Maltcms a Graphical User Interface and Application Framework for High-Throughput Metabolomics (pdf)
Nils Hoffmann, Mathias Wilhelm, Kai Stadermann, Jens Stoye
Presented at GCB 2011
The mzML vendor-neutral data format for chromatography-mass spectrometry (pdf)
Sean O'Callaghan, Steffen Neumann, Nils Hoffmann, Eric Deutsch, Vladimir A. Likic
Presented by Sean O'Callaghan at Metabolomics 2011

2010

ChromAUI - An integrated OpenSource Application for Metabolomics based on the Netbeans Rich Client Platform (pdf)
Nils Hoffmann, Mathias Wilhelm, Matthias Keck, Anja Döbbe, Karsten Niehaus, Olaf Kruse, Jens Stoye
Presented at Perspektive science fair 2010
ChromA4D - an integrated OpenSource Application Framework for comprehensive GCxGC-MS-based Metabolomics (pdf)
Nils Hoffmann, Mathias Wilhelm, Matthias Keck, Anja Döbbe, Karsten Niehaus, Olaf Kruse, Jens Stoye
Presented at Metabolomics 2010
Maltcms - an Application Framework for Processing of Metabolomics Data (Release 1.0) (pdf)
Mathias Wilhelm, Nils Hoffmann, Kai-Bernd Stadermann, Matthias Keck, Karsten Niehaus, Jens Stoye
Presented at Metabolomics 2010

2009

Maltcms - an Application Framework for Processing of Metabolomics Data (pdf)
Nils Hoffmann, Mathias Wilhelm, Matthias Keck, Anja Döbbe, Karsten Niehaus, Jens Stoye
Presented at GCB 2009

Projects

ChromA
Alignment of GC- and LC-MS data using a constrained and customizable variant of dynamic time warping.
ChromA at BiBiServ

Maltcms/ChromA[1D,2D,4D]
The Modular Application Toolkit for Chromatography-Mass Spectrometry provides a comprehensive, modular and easily extendible basis for the creation of rich applications in the context of metabolomics and proteomics research. It is licensed as open source under the GNU L-GPL v3
Maltcms at sourceforge.net

Maui (formerly ChromAUI)
Maui is the Maltcms User Interface, a rich client application for the interactive visualization, organization and analysis of GC-MS and GCxGC-MS data from metabolomics experiments.
Maui preview release

mzML for Metabolomics Initiative
The aims of this initiative are to test, validate, recommend, and in the long-term promote the use of mzML format as a standard vendor-neutral format for mass spectrometry-based metabolomics. (edited from the initiative homepage aims section)
mzML for Metabolomics Initiative