Hanna Marie Schilbert


    Current research focus

    • comparative genomics
    • structural variants
    • variant impact prediction / variant annotation
    • phylogenetic analyses
    • identification of economically and nutritional relevant loci
    • nutrigenetics/genomics
    • flavonoid biosynthesis
    • reduction of antinutrients
    • analysis of seed quality parameters
    • ...

    RNA-Seq analysis

    • Arabidopsis thaliana
    • Brassica napus
    • Mus musculus
    • ...

    Teaching

    • Python Programming in Genome Research (for Beginners)

      ekVV


    Projects for students: Please send me an email if you are interested in a project involving genomics/transcriptomics/bioinformatics/flavonoid biosynthesis/reduction of antinutrients/analysis of seed quality in Brassica napus.


    Publications

    • Pucker, B., Reiher, F. and Schilbert, H. M. Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tiglium. Plants 2020, 9, 1103. doi:10.3390/plants9091103.
      full text(peer-reviewed) PDF bioRxiv PUB github
    • Pellegrinelli V., Rodriguez-Cuenca S., Rouault C., Schilbert H., Virtue S., Moreno-Navarrete J. M., Bidault G., del Carmen Vazquez Borrego M., Dias A. R., Pucker B., Dale M., Campbell M., Carobbio S., Aron-Wisnewsky J., Mora S., Masiero M., Emmanouilidou A., Mukhopadhyay S., Dougan G., den Hoed M., Loos R., Fernandez-Real J. M., Chiarugi D., Clement K. and Vidal-Puig T. Dysregulation of macrophage PEPD in obesity determines adipose tissue fibro-inflammation and insulin resistance. doi:10.21203/rs.3.rs-57182.
      full text PDF
    • Schilbert H. M., Rempel A. and Pucker, B. (2020). Comparison of read mapping and variant calling tools for the analysis of plant NGS data. Plants. doi:10.3390/plants9040439.
      full text(peer-reviewed) bioRxiv PDF PUB data
    • Pucker B & Schilbert H. Genomics and Transcriptomics Advance in Plant Sciences. Molecular Approaches in Plant Biology and Environmental Challenges. Springer. 2019. ISBN 978-981-15-0690-1. doi:10.1007/978-981-15-0690-1
      springer(peer-reviewed book chapter) PUB
    • Schilbert, H.M., Pellegrinelli, V., Rodriguez-Cuenca, S., Vidal-Puig, A. & Pucker, B. (2018). Harnessing natural diversity to identify key amino acid residues in prolidase. bioRxiv 423475; doi:10.1101/423475
      full text PUB
    • Pucker, B. Schilbert, H.M., Schumacher, S.F. (2019). Integrating Molecular Biology and Bioinformatics Education. Journal of Integrative Bioinformatics. doi:10.1515/jib-2019-0005.
      full text(peer-reviewed) PDF PubMed preprint PUB
      Applied Genome Research (github) Molecular Methods in Genome Research (github)