Hanna Marie Schilbert

Welcome! I am always open for discussing science, learning, and meeting new people.


• group: Genetics & Genomics of Plants
• email: h.schilbert{a}uni-bielefeld.de
• office: G0-105
• lab: G0-119
• ORCID: 0000-0003-0474-7753
• Google Scholar: Hanna Marie Schilbert
• twitter: @HSchilbert Follow @HSchilbert
• github: hschilbert
• LinkedIn: Hanna Marie Schilbert
• DILS graduate school member: My project



Current research focus

• comparative genomics
• structural variants
• variant impact prediction / variant annotation
• phylogenetic analyses
• identification of economically and nutritional relevant loci
• nutrigenetics/genomics
• flavonoid biosynthesis
• reduction of antinutrients
• analysis of seed quality parameters
• ...



RNA-Seq analysis

• Arabidopsis thaliana
• Brassica napus
• Mus musculus
• ...



Teaching

• Literaturseminar: molekulare Biomedizin, Nutrigenetik und Nutrigenomik
• Python Programming in Genome Research (for Beginners)
  

  ekVV




Projects for students: Please send me an email if you are interested in a project involving genomics/transcriptomics/bioinformatics/flavonoid biosynthesis/reduction of antinutrients/analysis of seed quality in Brassica napus.




Publications

• Vazquez D. S.*, Schilbert H. M.*, Dodero V. I. (2021). Molecular and Structural Parallels between Gluten Pathogenic Peptides and Bacterial-Derived Proteins by Bioinformatics Analysis. International Journal of Molecular Sciences 2021, 22(17), 9278. doi:10.3390/ijms22179278
  full text(peer-reviewed) PDF PUB *shared first authorship
• Schilbert H. M., Kleinbölting N, Weisshaar B, Pucker B.(2021). Arabidopsis thaliana methylation pattern analysis based on ONT sequence reads. Bielefeld University.
  full text PUB
• Schilbert, H. M., Schöne M., Baier T., Busche M., Viehöver P., Weisshaar B., Holtgräwe D. (2021). Characterization of the Brassica napus flavonol synthase gene family reveals bifunctional flavonol synthases. bioRxiv 2021.06.30.450533; doi:10.1101/2021.06.30.450533
  full text PUB
• Pucker, B., Reiher, F. and Schilbert, H. M. (2020). Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tiglium. Plants 2020, 9, 1103. doi:10.3390/plants9091103.
  full text(peer-reviewed) PDF bioRxiv PUB github
• Pellegrinelli V., Rodriguez-Cuenca S., Rouault C., Schilbert H., Virtue S., Moreno-Navarrete J. M., Bidault G., del Carmen Vazquez Borrego M., Dias A. R., Pucker B., Dale M., Campbell M., Carobbio S., Aron-Wisnewsky J., Mora S., Masiero M., Emmanouilidou A., Mukhopadhyay S., Dougan G., den Hoed M., Loos R., Fernandez-Real J. M., Chiarugi D., Clement K. and Vidal-Puig T. Dysregulation of macrophage PEPD in obesity determines adipose tissue fibro-inflammation and insulin resistance. doi:10.21203/rs.3.rs-57182.
  full text PDF
• Schilbert H. M., Rempel A. and Pucker, B. (2020). Comparison of read mapping and variant calling tools for the analysis of plant NGS data. Plants. doi:10.3390/plants9040439.
  full text(peer-reviewed) bioRxiv PDF PUB data
• Pucker B & Schilbert H. (2019). Genomics and Transcriptomics Advance in Plant Sciences. Molecular Approaches in Plant Biology and Environmental Challenges. Springer. 2019. ISBN 978-981-15-0690-1. doi:10.1007/978-981-15-0690-1
  springer(peer-reviewed book chapter) PUB
• Schilbert, H.M., Pellegrinelli, V., Rodriguez-Cuenca, S., Vidal-Puig, A. & Pucker, B. (2018). Harnessing natural diversity to identify key amino acid residues in prolidase. bioRxiv 423475; doi:10.1101/423475
  full text PUB
• Pucker, B. Schilbert, H.M., Schumacher, S.F. (2019). Integrating Molecular Biology and Bioinformatics Education. Journal of Integrative Bioinformatics. doi:10.1515/jib-2019-0005.
  full text(peer-reviewed) PDF PubMed preprint PUB
  Applied Genome Research (github) Molecular Methods in Genome Research (github)