The Bioinformatics Research Facility (BRF) at the Center for Biotechnology, as well as the polyomics research team, offers software, services, support, and consulting in the field of microbial comparative, meta- and traditional genomics, metaproteomics and poly-omics data integration, and most recently cloud computing and cloud based data analysis workflows to the national and international research community.


Citations - In order to sustain and further improve our services we kindly ask to cite our analysis platforms as following:

Fusion

Brink, B., Seidel, A., Kleinbölting, N., Nattkemper, T. W. & Albaum, S. 2016.

Omics Fusion - A Platform for Integrative Analysis of Omics Data.

Journal of Integrative Bioinformatics 13:296.

PUB | PubMed

EMMA

Dondrup, M., S. Albaum, T. Griebel, K. Henckel, S. Jünemann, T. Kahlke, C.K. Kleindt, H. Kuester, B. Linke, D. Mertens, V. Mittard-Runte, H. Neuweger, K.J. Runte, A. Tauch, F. Tille, A. Pühler, & A. Goesmann. 2009.

EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data.

BMC Bioinformatics 10: 50.

PUB | PDF | PubMed | UK PMC

 

MeltDB

Kessler, N., Bonte, A., Langenkämper, G., Niehaus, K., Goesmann, A. & Nattkemper, T.W. 2013.

MeltDB 2.0 - Advances of the metabolomics software system.

Bioinformatics, 29(19): 2452-2459.

PUB| DOI | WoS | PubMed | Europe PMC

 

Neuweger, H., S. Albaum, M. Dondrup, M. Persicke, T. Watt, K. Niehaus, J. Stoye, & A. Goesmann. 2008.

MeltDB: a software platform for the analysis and integration of metabolomics experiment data.

Bioinformatics, 24(23), 2726 - 2732.

PUB | PubMed

 

QuPE

Albaum SP, Neuweger H, Fränzel B, Lange S, Mertens D, Trötschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A. 2009.

Qupe--a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.

Bioinformatics, 25(23), 3128-34.

PUB | PubMed

 

Allocator

Kessler, N., Walter, F., Persicke, M., Albaum, S., Kalinowski, J., Goesmann, A., Niehaus, K. & Nattkemper, T.W. 2014.

ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis.

PLoS ONE 9(11): e113909.

PUB | PDF| DOI | WoS | PubMed | Europe PMC

 

Carmen

Schneider, J., Vorhölter, F.J., Trost, E., Blom, J., Musa, Y.R., Neuweger, H., Niehaus, K., Schatschneider, S., Tauch, A. & Goesmann, A. 2010.

CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.

Genetics and Molecular Research 9(3): 1660 – 1672.

PUB | PubMed

 


 

Acknowledgments - If you are using our compute infrastructure, i.e., our compute cluster, our cloud, or our remote desktop work places, we kindly ask to account us for general software provisioning and support in the acknowledgment section of your publications via:

We acknowledge the Bielefeld-Gießen Center for Microbial Bioinformatics (BiGi) of the BMBF-funded German network for bioinformatics infrastructure (de.NBI, grant 031A533) for provision of compute resources and general support.

 


 

Feedback - As being part of the project German Networks for Bioinformatics Infrastructure (de.NBI) our services are free of charge to the scientific community. Hence, the provisioning of our services (soft- and hardware) rely on third party funding, e.g. by the BMBF, to which we need to give account for on a regular basis. Therefore, and also to further optimize our services to the best of your needs, we kindly ask you to rate our services accordingly, Thanks!

 

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