Visualizing Functional Genomics Data on High Quality Pathway Maps

ProMeTra is an open source framework that provides visualization methods for multi-omics datasets. The open vector based graphics format SVG is used to facilitate the visualization of the results of complex functional genomics experiments.

ProMeTra supports simple input formats like CSV files and EXCEL documents. The integration of genomic and transcriptomic datasets originating from MeltDB, QuPE or EMMA is achieved via SOAP based web services. Thus, interactive visualizations of metabolite concentrations together with transcript meassurements mapped on the pathways and GenomeMaps present in ProMeTra can easily be generated.

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ProMeTra documentation

  • The ProMeTra Wiki provides additional information on the general concepts and integration with existing functional genomics platforms.

Neuweger, H., M. Persicke, S. Albaum, T. Bekel, M. Dondrup, A.T. Hüser, J. Winnebald, J. Schneider, J. Kalinowski, & A. Goesmann. 2009. “Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example”. BMC Systems Biology, 3:82.
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