Personal Homepage of Nils Hoffmann

Nils Hoffmann

Postal Address: Universität Bielefeld
AG Genominformatik
33594 Bielefeld
Germany
Office: U10-144
Office Phone: +49-(0)521-106-4342
E-mail: nils.hoffmann[kanelbullar]cebitec.uni-bielefeld.de

[CuDB Photo]

Research Interests

  • Algorithms for analytical high-throughput applications, e.g. GC, GCxGC, and LC-MS
  • Chem(o)informatics, QSPR
  • Scientific visualization
  • Software engineering

Publications

Posters

2013

  • BiPACE - a generic retention time alignment algorithm for gas-chromatography mass-spectrometry data (pdf)
    Nils Hoffmann, Mathias Wilhelm, Anja Doebbe, Karsten Niehaus, Jens Stoye
    Presented at Metabolomics 2013

2012

  • Maltcms and Maui - an OpenSource Software Framework and User Interface for High-Throughput Metabolomics (pdf)
    Nils Hoffmann, Mathias Wilhelm, Kai Stadermann, Jens Stoye
    Presented at ASMS 2012
  • Proteus, An interactive Laboratory Journal Application for Gel-based Proteomics (pdf)
    Konstantin Otte, Nils Hoffmann, Fabian Schulte, Karsten Niehaus, Jens Stoye
    Presented at FGP 2012

2011

  • Maui and Maltcms a Graphical User Interface and Application Framework for High-Throughput Metabolomics (pdf)
    Nils Hoffmann, Mathias Wilhelm, Kai Stadermann, Jens Stoye
    Presented at GCB 2011
  • The mzML vendor-neutral data format for chromatography-mass spectrometry (pdf)
    Sean O'Callaghan, Steffen Neumann, Nils Hoffmann, Eric Deutsch, Vladimir A. Likic
    Presented by Sean O'Callaghan at Metabolomics 2011

2010
  • ChromAUI - An integrated OpenSource Application for Metabolomics based on the Netbeans Rich Client Platform (pdf)
    Nils Hoffmann, Mathias Wilhelm, Matthias Keck, Anja Döbbe, Karsten Niehaus, Olaf Kruse, Jens Stoye
    Presented at Perspektive science fair 2010
  • ChromA4D - an integrated OpenSource Application Framework for comprehensive GCxGC-MS-based Metabolomics (pdf)
    Nils Hoffmann, Mathias Wilhelm, Matthias Keck, Anja Döbbe, Karsten Niehaus, Olaf Kruse, Jens Stoye
    Presented at Metabolomics 2010
  • Maltcms - an Application Framework for Processing of Metabolomics Data (Release 1.0) (pdf)
    Mathias Wilhelm, Nils Hoffmann, Kai-Bernd Stadermann, Matthias Keck, Karsten Niehaus, Jens Stoye
    Presented at Metabolomics 2010

2009

  • Maltcms - an Application Framework for Processing of Metabolomics Data (pdf)
    Nils Hoffmann, Mathias Wilhelm, Matthias Keck, Anja Döbbe, Karsten Niehaus, Jens Stoye
    Presented at GCB 2009

Projects

ChromA
Alignment of GC- and LC-MS data using a constrained and customizable variant of dynamic time warping.
ChromA at BiBiServ

Maltcms/ChromA[1D,2D,4D]
The Modular Application Toolkit for Chromatography-Mass Spectrometry provides a comprehensive, modular and easily extendible basis for the creation of rich applications in the context of metabolomics and proteomics research. It is licensed as open source under the GNU L-GPL v3
Maltcms at sourceforge.net

Maui (formerly ChromAUI)
Maui is the Maltcms User Interface, a rich client application for the interactive visualization, organization and analysis of GC-MS and GCxGC-MS data from metabolomics experiments.
Maui preview release

mzML for Metabolomics Initiative
The aims of this initiative are to test, validate, recommend, and in the long-term promote the use of mzML format as a standard vendor-neutral format for mass spectrometry-based metabolomics. (edited from the initiative homepage aims section)
mzML for Metabolomics Initiative

Teaching

Winter Term 2009/2010 Summer Term 2009 Winter Term 2008/2009 Summer Term 2008 Winter Term 2007/2008

Collaborations

Molecular Phytopathology
Chemical Ecology