Personal Homepage of Nils Hoffmann
Personal Homepage of Nils Hoffmann
Nils Hoffmann
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Research Interests
- Algorithms for analytical high-throughput applications, e.g. GC, GCxGC, and LC-MS
- Chem(o)informatics, QSPR
- Scientific visualization
- Software engineering
Publications
Posters
2013
- BiPACE - a generic retention time alignment algorithm for gas-chromatography mass-spectrometry data (pdf) Nils Hoffmann, Mathias Wilhelm, Anja Doebbe, Karsten Niehaus, Jens Stoye Presented at Metabolomics 2013
2012
- Maltcms and Maui - an OpenSource Software Framework and User Interface for High-Throughput Metabolomics (pdf) Nils Hoffmann, Mathias Wilhelm, Kai Stadermann, Jens Stoye Presented at ASMS 2012
- Proteus, An interactive Laboratory Journal Application for Gel-based Proteomics (pdf) Konstantin Otte, Nils Hoffmann, Fabian Schulte, Karsten Niehaus, Jens Stoye Presented at FGP 2012
2011
- Maui and Maltcms a Graphical User Interface and Application Framework for High-Throughput Metabolomics (pdf) Nils Hoffmann, Mathias Wilhelm, Kai Stadermann, Jens Stoye Presented at GCB 2011
- The mzML vendor-neutral data format for chromatography-mass spectrometry (pdf) Sean O'Callaghan, Steffen Neumann, Nils Hoffmann, Eric Deutsch, Vladimir A. Likic Presented by Sean O'Callaghan at Metabolomics 2011
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ChromAUI - An integrated OpenSource Application for Metabolomics based on the Netbeans Rich Client Platform (pdf)
Nils Hoffmann, Mathias Wilhelm, Matthias Keck, Anja Döbbe, Karsten Niehaus, Olaf Kruse, Jens Stoye
Presented at Perspektive science fair 2010 -
ChromA4D - an integrated OpenSource Application Framework for comprehensive GCxGC-MS-based Metabolomics (pdf)
Nils Hoffmann, Mathias Wilhelm, Matthias Keck, Anja Döbbe, Karsten Niehaus, Olaf Kruse, Jens Stoye
Presented at Metabolomics 2010 -
Maltcms - an Application Framework for Processing of Metabolomics Data (Release 1.0) (pdf)
Mathias Wilhelm, Nils Hoffmann, Kai-Bernd Stadermann, Matthias Keck, Karsten Niehaus, Jens Stoye
Presented at Metabolomics 2010
2009
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Maltcms - an Application Framework for Processing of Metabolomics Data (pdf)
Nils Hoffmann, Mathias Wilhelm, Matthias Keck, Anja Döbbe, Karsten Niehaus, Jens Stoye
Presented at GCB 2009
Projects
ChromA
Alignment of GC- and LC-MS data using a constrained and customizable variant of dynamic time warping.
ChromA at BiBiServ
Maltcms/ChromA[1D,2D,4D]
The Modular Application Toolkit for Chromatography-Mass Spectrometry provides a comprehensive, modular and easily extendible basis for the creation of rich applications in the context of metabolomics and proteomics research. It is licensed as open source under the GNU L-GPL v3
Maltcms at sourceforge.net
Maui (formerly ChromAUI)
Maui is the Maltcms User Interface, a rich client application for the interactive visualization, organization and analysis of GC-MS and GCxGC-MS data from metabolomics experiments.
Maui preview release
mzML for Metabolomics Initiative
The aims of this initiative are to test, validate, recommend, and in the long-term promote the use of mzML format as a standard vendor-neutral format for mass spectrometry-based metabolomics. (edited from the initiative homepage aims section)
mzML for Metabolomics Initiative
Teaching
Winter Term 2009/2010- Teaching assistant/organization of tutorials: Foundations of Sequence Analysis
- Seminar: Bioinformatics in Metabolomics and Proteomics
- Teaching assistant/organization of tutorials: Advanced Algorithms in Sequence Analysis
- Project: Random-model of simulated evolution
- Organization of tutorials: Foundations of Sequence Analysis
- Seminar: Genome Informatics Journal Club
- Seminar: Genome Informatics Group Seminar
- Seminar: Bioinformatics in Metabolomics and Proteomics
- Practical course: Sequence Analysis
- Seminar: Genome Informatics Group Seminar
- Teaching Assistant for Algorithms and Datastructures I
- Seminar: Genome Informatics Group Seminar
- Seminar: Genome Informatics Journal Club
Collaborations
Molecular Phytopathology
Chemical Ecology