QuPE Documentation
There are several sources of information about the QuPE system available:
- The QuPE publication provides a brief overview of the system and the graphical user interface.
- A step-by-step explanation of important worksteps of QuPE, from the creation of a new experiment, to the upload of data, to the conduction of statistical analyses can be found on the following webpage: QuPE documentation (extern).
- Based on three real-world datasets, an application study was conducted that provides some guidance on the computational analysis of isotope-labeled mass spectrometry-based quantiative proteomics data.
- For software developers, there is also comprehensive documentation of the API of the QuPE system available.
- Information on algorithms and resources related to problems in mass spectrometry and protein identification can be found here.