QuPE Documentation

There are several sources of information about the QuPE system available:

  • The QuPE publication provides a brief overview of the system and the graphical user interface.
  • A step-by-step explanation of important worksteps of QuPE, from the creation of a new experiment, to the upload of data, to the conduction of statistical analyses can be found on the following webpage: QuPE documentation (extern).
  • Based on three real-world datasets, an application study was conducted that provides some guidance on the computational analysis of isotope-labeled mass spectrometry-based quantiative proteomics data.
  • For software developers, there is also comprehensive documentation of the API of the QuPE system available.
  • Information on algorithms and resources related to problems in mass spectrometry and protein identification can be found here.