The CeBiTec is led by an Executive Board constituted by elected representatives of all status groups of the CeBiTec. The Executive Board elects the Scientific Director and the Deputy and appoints the Executive Secretary.

A Research Board advices the Scientific Director and the Executive Board with regards to the future development of the scientific profile of the CeBiTec and the strategic cooperation with other scientific institutions.

The CeBiTec is counselled and assisted in its scientific work by a Scientific Advisory Board.