Large Scale Genomics and Big Data Bioinformatics
This research area focuses on genome research on bacteria relevant for biotechnology, agriculture and the environment, on structural and functional decoding of genomes of crop plants, animal cell cultures and microalgae, on metagenomics analysis of microbial communities as well as on elucidation of the function and interaction of genes and genomes with post-genomics and bioinformatics methods.
Speakers: Prof. Dr. J. Kalinowski and Prof. Dr. Jens Stoye
Selection of current projects
- DataPLANT – Daten in Pflanzen-Grundlagenforschung
Responsible: Prof. Dr. A. Bräutigam
Funded by: Deutsche Forschungsgemeinschaft (DFG) - Pflanzenzüchtungsforschung-Verbundvorhaben: Modernste Virtualitäts- und erweiterte Realitäts-Verfahren | TP-D
Responsible: Prof. Dr. A. Bräutigam
Funded by: Deutsche Forschungsgemeinschaft (DFG) - NUM 2.0 - GenSurv: Netzwerk Universitätsmedizin 2.0 - Genomic Pathogen Surveillance and Translational Research
Responsible: Prof. Dr. A. Sczyrba
Funded by: Federal Ministry of Education and Research (BMBF) - Horizon 2020 - BLUETOOLS: Innovative tools for sustainable exploration of marine microbiomes: towards a circular blue bioeconomy and healthier marine environments
Responsible: Prof. Dr. A. Sczyrba
Funded by: European Commission (EU H2020) - Konsortium NFDI 7/1 "DataPLANT – Daten in Pflanzen-Grundlagenforschung"
Responsible: Prof. Dr. A. Bräutigam
Funded by: Deutsche Forschungsgemeinschaft (DFG) - NFDI4Microbiota - Nationale Forschungsdateninfrastruktur für Mikrobiota-Forschung
Responsible: Prof. Dr. J. Stoye
Funded by: Deutsche Forschungsgemeinschaft (DFG) - NFDI4BioDiversity - A Consortium for the National Research Data Infrastructure
Responsible: Prof. Dr. J. Stoye
Funded by: Deutsche Forschungsgemeinschaft (DFG) - EpicBeet: Stabilität und Vererbbarkeit von DNA-Methylierungsmustern in Zuckerrübe: Einfluss auf phänotypische Plastizität, TE-Aktivitäten und Potential für die Züchtung
Responsible: Prof. Dr. B. Weisshaar
Funded by: Federal Ministry of Education and Research (BMBF) - BIOGAS-GeneMining – Charakterisierung des genetischen und enzymatischen Potentials von Biogas-Mikrobiomen mittels Metaanalyse von Metagenomdatensätzen
Responsible: Prof. Dr. A. Pühler
Funded by: Federal Ministry of Food and Agriculture (BMEL) - de.NBI – German Network for Bioinformatics infrastructure
Responsible: Prof. Dr. A. Pühler
Funded by: Federal Ministry of Education and Research (BMBF)
Twitter: @denbiOffice - SIMBA – Sustainable innovation of microbiome applications in food systems
Responsible: Prof. Dr. A. Sczyrba
Funded by: European Commission (EU H2020)
Twitter: @SIMBAproject_EU - EOSC-Life: Providing an open collaborative space for digital biology in Europe
Responsible: Prof. Dr. A. Sczyrba
Funded by: European Commission (EU H2020) - HiPoAF – Unleashing the hidden potential of the anaerobic fungi
Responsible: Prof. Dr. A. Sczyrba
Funded by: German Research Foundation (DFG, DACH) - ELIXIR Compute Platform: Hybrid Cloud
Responsible: Prof. Dr. A. Sczyrba
Funded by: ELIXIR
Twitter: @ELIXIREurope - Plasmidome – Machine Learning methods for data-driven discovery of antibiotic resistance plasmid dissemination and evolution
Responsible: Prof. Dr. A. Sczyrba
Funded by: Novo Nordisk Foundation - de.NBI Cloud: Cloud Solutions of the German Network for Bioinformatics Infrastructure (de.NBI) at Bielefeld University
Responsible: Prof. Dr. A. Sczyrba, Prof. Dr. Jens Stoye
Funded by: Federal Ministry of Education and Research (BMBF) - PANGAIA – Pan-genome Graph Algorithms and Data Integration
Responsible: Prof. Dr. A. Schönhuth (coordinator), Prof. Dr. J. Stoye
Funded by: European Commission (EU H2020, RISE)
Twitter: @PangaiaProject - ALPACA - ALgorithms for PAngenome Computational Analysis
Responsible: Prof. Dr. A. Schönhuth (coordinator), Prof. Dr. J. Stoye
Funded by: European Commission (EU H2020, MSCA-ITN) - de.NBI – German Network of Bioinformatics Infrastructure – BiGi – Bioinformatics Ressource Center for Microbial Genome Research in Biotechnology and Medicine
Responsible: Prof. Dr. J. Stoye
Funded by: Federal Ministry of Education and Research (BMBF)
Twitter: @denbiOffice - RaPEQ2 – Pflanzenzüchtungsforschung-Verbundvorhaben: Rapssaat als einheimische Quelle von hochwertigem Protein für die menschliche Ernährung
Responsible: Prof. Dr. B. Weisshaar
Funded by: Federal Ministry of Education and Research (BMBF) - DIGIRAS - Optimierung der landgestützten Fischproduktion in digitalen Kreislauf-Aquakultursystemen der nächsten Generation
Responsible: Prof. Dr. J. Kalinowski
Funded by: ERA-NET Cofund (BMBF) - Taxon-OMICS: Neue Herangehensweisen zur Entdeckung und Benennung von Arten und Biodiversität / Teilprojekt: „Phylogenomik der Gattung Hypoxylon basierend auf 50 neuen, hochwertigen Genomen und mit besonderem Schwerpunkt auf dem H. rubiginosum-Komplex“
Responsible: Prof. Dr. J. Kalinowski
Funded by: Deutsche Forschungsgemeinschaft (DFG) - BioProMare: EXPLOMARE - Erforschung und Exploitation des Biosynthesepotentials mariner Aktinobakterien
Responsible: Prof. Dr. J. Kalinowski
Funded by: Federal Ministry of Education and Research (BMBF)